IL_4V8A_272

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_272 not in the Motif Atlas

Homologous match to IL_4LFB_049

Geometric discrepancy: 0.2641

The information below is about IL_4LFB_049

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

4V8A|1|CA|C|1128
4V8A|1|CA|C|1129
4V8A|1|CA|A|1130
4V8A|1|CA|G|1131
4V8A|1|CA|C|1132
*
4V8A|1|CA|G|1142
4V8A|1|CA|G|1143

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CI

30S ribosomal protein S9