3D structure

PDB id
4V8A (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GUC*GCC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8A_284 not in the Motif Atlas
Homologous match to IL_4LFB_063
Geometric discrepancy: 0.104
The information below is about IL_4LFB_063
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

4V8A|1|CA|G|1435
4V8A|1|CA|U|1436
4V8A|1|CA|C|1437
*
4V8A|1|CA|G|1464
4V8A|1|CA|C|1465
4V8A|1|CA|C|1466

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain BA
Large subunit ribosomal RNA; LSU rRNA
Chain BT
50S ribosomal protein L19
Chain CT
30S ribosomal protein S20

Coloring options:


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