IL_4V8A_321

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_321 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0842

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V8A|1|DA|G|887
4V8A|1|DA|G|888
4V8A|1|DA|A|889
4V8A|1|DA|G|890
4V8A|1|DA|U|891
4V8A|1|DA|A|892
4V8A|1|DA|C|893
4V8A|1|DA|G|894
*
4V8A|1|DA|U|905
4V8A|1|DA|G|906
4V8A|1|DA|A|907
4V8A|1|DA|A|908
4V8A|1|DA|A|909
4V8A|1|DA|C|910

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DL

30S ribosomal protein S12

Chain DQ

30S ribosomal protein S17