IL_4V8A_330

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

4V8A|1|DA|C|1200, 4V8A|1|DA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_330 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.1421

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V8A|1|DA|G|1057
4V8A|1|DA|G|1058
*
4V8A|1|DA|U|1199
4V8A|1|DA|C|1200
4V8A|1|DA|A|1201
4V8A|1|DA|G|1202
4V8A|1|DA|C|1203

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DC

30S ribosomal protein S3

Chain DJ

30S ribosomal protein S10

Chain DN

30S ribosomal protein S14