IL_4V8A_335
3D structure
- PDB id
- 4V8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UACAAAG*CAAAAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8A_335 not in the Motif Atlas
- Homologous match to IL_4LFB_051
- Geometric discrepancy: 0.1278
- The information below is about IL_4LFB_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8A|1|DA|U|1247
4V8A|1|DA|A|1248
4V8A|1|DA|C|1249
4V8A|1|DA|A|1250
4V8A|1|DA|A|1251
4V8A|1|DA|A|1252
4V8A|1|DA|G|1253
*
4V8A|1|DA|C|1284
4V8A|1|DA|A|1285
4V8A|1|DA|A|1286
4V8A|1|DA|A|1287
4V8A|1|DA|A|1288
4V8A|1|DA|A|1289
4V8A|1|DA|G|1290
Current chains
- Chain DA
- 16S ribosomal RNA
Nearby chains
- Chain DG
- 30S ribosomal protein S7
- Chain DI
- 30S ribosomal protein S9
- Chain DJ
- 30S ribosomal protein S10
- Chain DN
- 30S ribosomal protein S14
- Chain DU
- 30S ribosomal protein THX
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