3D structure

PDB id
4V8A (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UACAAAG*CAAAAAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8A_335 not in the Motif Atlas
Homologous match to IL_4LFB_051
Geometric discrepancy: 0.1278
The information below is about IL_4LFB_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09129.2
Basepair signature
cWW-L-R-tWH-L-R-L-tWW-cWW
Number of instances in this motif group
2

Unit IDs

4V8A|1|DA|U|1247
4V8A|1|DA|A|1248
4V8A|1|DA|C|1249
4V8A|1|DA|A|1250
4V8A|1|DA|A|1251
4V8A|1|DA|A|1252
4V8A|1|DA|G|1253
*
4V8A|1|DA|C|1284
4V8A|1|DA|A|1285
4V8A|1|DA|A|1286
4V8A|1|DA|A|1287
4V8A|1|DA|A|1288
4V8A|1|DA|A|1289
4V8A|1|DA|G|1290

Current chains

Chain DA
16S ribosomal RNA

Nearby chains

Chain DG
30S ribosomal protein S7
Chain DI
30S ribosomal protein S9
Chain DJ
30S ribosomal protein S10
Chain DN
30S ribosomal protein S14
Chain DU
30S ribosomal protein THX

Coloring options:


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