IL_4V8A_348

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

4V8A|1|AA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_348 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1096

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V8A|1|AA|C|844
4V8A|1|AA|G|845
4V8A|1|AA|C|846
4V8A|1|AA|U|847
4V8A|1|AA|G|848
4V8A|1|AA|A|849
4V8A|1|AA|C|850
*
4V8A|1|AA|G|927
4V8A|1|AA|G|928
4V8A|1|AA|U|930
4V8A|1|AA|G|931
4V8A|1|AA|G|932
4V8A|1|AA|A|933
4V8A|1|AA|G|934

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L30

Chain BP

50S ribosomal protein L15