IL_4V8A_363

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_363 not in the Motif Atlas

Homologous match to IL_5J7L_018

Geometric discrepancy: 0.1485

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4V8A|1|DA|G|371
4V8A|1|DA|C|372
4V8A|1|DA|A|373
4V8A|1|DA|A|374
4V8A|1|DA|U|375
*
4V8A|1|DA|A|389
4V8A|1|DA|C|390

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DP

30S ribosomal protein S16