IL_4V8B_038

3D structure

PDB id

4V8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8B_038 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0656

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

4V8B|1|AA|G|887
4V8B|1|AA|G|888
4V8B|1|AA|A|889
4V8B|1|AA|G|890
4V8B|1|AA|U|891
4V8B|1|AA|A|892
4V8B|1|AA|C|893
4V8B|1|AA|G|894
*
4V8B|1|AA|U|905
4V8B|1|AA|G|906
4V8B|1|AA|A|907
4V8B|1|AA|A|908
4V8B|1|AA|A|909
4V8B|1|AA|C|910

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AO

30S RIBOSOMAL PROTEIN S12

Chain AT

30S RIBOSOMAL PROTEIN S17