IL_4V8B_168

3D structure

PDB id

4V8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8B_168 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.122

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V8B|1|BA|C|2652
4V8B|1|BA|U|2653
4V8B|1|BA|A|2654
4V8B|1|BA|G|2655
4V8B|1|BA|U|2656
4V8B|1|BA|A|2657
4V8B|1|BA|C|2658
*
4V8B|1|BA|G|2663
4V8B|1|BA|G|2664
4V8B|1|BA|A|2665
4V8B|1|BA|C|2666
4V8B|1|BA|C|2667
4V8B|1|BA|G|2668

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain BH

50S ribosomal protein L6