IL_4V8B_280

3D structure

PDB id

4V8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCUAG*CAAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8B_280 not in the Motif Atlas

Geometric match to IL_4V88_474

Geometric discrepancy: 0.3532

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

4V8B|1|DA|G|875
4V8B|1|DA|C|876
4V8B|1|DA|U|877
4V8B|1|DA|A|878
4V8B|1|DA|G|879
*
4V8B|1|DA|C|898
4V8B|1|DA|A|899
4V8B|1|DA|A|900
4V8B|1|DA|A|901
4V8B|1|DA|C|902

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain CB

Transfer RNA; tRNA

Chain DP

50S ribosomal protein L16

Chain DV

50S ribosomal protein L25