IL_4V8C_054

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8C_054 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.1339

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

4V8C|1|AA|U|1357
4V8C|1|AA|G|1358
4V8C|1|AA|A|1359
4V8C|1|AA|A|1360
4V8C|1|AA|G|1361
*
4V8C|1|AA|C|1370
4V8C|1|AA|G|1371
4V8C|1|AA|U|1372
4V8C|1|AA|A|1373
4V8C|1|AA|G|1374

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain A7

50S ribosomal protein L34

Chain AD

50S ribosomal protein L2

Chain AZ

50S ribosomal protein L28