IL_4V8C_108

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

4V8C|1|AA|C|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8C_108 not in the Motif Atlas

Homologous match to IL_7RQB_108

Geometric discrepancy: 0.0889

The information below is about IL_7RQB_108

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

4V8C|1|AA|G|2838
4V8C|1|AA|G|2839
*
4V8C|1|AA|U|2878
4V8C|1|AA|C|2879
4V8C|1|AA|C|2880

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain A0

50S ribosomal protein L17