3D structure

PDB id
4V8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
UG*CAACAAG
Length
9 nucleotides
Bulged bases
4V8C|1|BA|C|1509
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8C_181 not in the Motif Atlas
Homologous match to IL_7RQB_061
Geometric discrepancy: 0.3248
The information below is about IL_7RQB_061
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_52493.1
Basepair signature
cWW-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

4V8C|1|BA|U|1482
4V8C|1|BA|G|1483
*
4V8C|1|BA|C|1506
4V8C|1|BA|A|1507
4V8C|1|BA|A|1508
4V8C|1|BA|C|1509
4V8C|1|BA|A|1510
4V8C|1|BA|A|1511
4V8C|1|BA|G|1512

Current chains

Chain BA
RNA (2912-MER)

Nearby chains

No other chains within 10Å

Coloring options:


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