IL_4V8C_181

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

4V8C|1|BA|C|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8C_181 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.3248

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4V8C|1|BA|U|1482
4V8C|1|BA|G|1483
*
4V8C|1|BA|C|1506
4V8C|1|BA|A|1507
4V8C|1|BA|A|1508
4V8C|1|BA|C|1509
4V8C|1|BA|A|1510
4V8C|1|BA|A|1511
4V8C|1|BA|G|1512

Current chains

Chain BA

RNA (2912-MER)

Nearby chains