IL_4V8C_205

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4V8C|1|BA|G|2112

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8C_205 not in the Motif Atlas

Geometric match to IL_7Q80_003

Geometric discrepancy: 0.2663

The information below is about IL_7Q80_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V8C|1|BA|G|2110
4V8C|1|BA|C|2111
4V8C|1|BA|G|2112
4V8C|1|BA|U|2113
4V8C|1|BA|A|2114
4V8C|1|BA|G|2115
4V8C|1|BA|G|2116
4V8C|1|BA|A|2117
4V8C|1|BA|U|2118
4V8C|1|BA|A|2119
4V8C|1|BA|G|2120
*
4V8C|1|BA|C|2178
4V8C|1|BA|C|2179

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

Transfer RNA; tRNA