IL_4V8C_225

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CU*AUAAG

Length

7 nucleotides

Bulged bases

4V8C|1|BA|A|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8C_225 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.1039

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

4V8C|1|BA|C|2695
4V8C|1|BA|U|2696
*
4V8C|1|BA|A|2711
4V8C|1|BA|U|2712
4V8C|1|BA|A|2712|||A
4V8C|1|BA|A|2713
4V8C|1|BA|G|2714

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain B0

50S ribosomal protein L17

Chain BR

50S ribosomal protein L19