IL_4V8C_310

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

4V8C|1|DA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8C_310 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1016

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

4V8C|1|DA|G|148
4V8C|1|DA|A|149
4V8C|1|DA|C|150
4V8C|1|DA|A|151
4V8C|1|DA|A|152
4V8C|1|DA|C|153
*
4V8C|1|DA|G|168
4V8C|1|DA|C|169
4V8C|1|DA|U|170
4V8C|1|DA|A|171
4V8C|1|DA|A|172
4V8C|1|DA|U|173
4V8C|1|DA|C|174

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DW

30S RIBOSOMAL PROTEIN S20