IL_4V8C_323

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

4V8C|1|DA|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8C_323 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.0839

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

4V8C|1|DA|C|569
4V8C|1|DA|G|570
4V8C|1|DA|U|571
4V8C|1|DA|A|572
4V8C|1|DA|A|573
4V8C|1|DA|A|574
4V8C|1|DA|G|575
*
4V8C|1|DA|C|880
4V8C|1|DA|G|881

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DH

30S RIBOSOMAL PROTEIN S5

Chain DO

30S RIBOSOMAL PROTEIN S12

Chain DT

30S RIBOSOMAL PROTEIN S17