IL_4V8C_354

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUC,GAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8C_354 not in the Motif Atlas

Geometric match to IL_3LA5_001

Geometric discrepancy: 0.1903

The information below is about IL_3LA5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V8C|1|DA|G|1312
4V8C|1|DA|U|1313
4V8C|1|DA|C|1314
*
4V8C|1|DA|G|1323
4V8C|1|DA|A|1324
4V8C|1|DA|C|1325

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L31

Chain DP

30S RIBOSOMAL PROTEIN S13

Chain DV

30S RIBOSOMAL PROTEIN S19

Chain DX

30S RIBOSOMAL PROTEIN THX