IL_4V8D_066

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGG*CCAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUGG,CCAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_066 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.2976

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V8D|1|AB|G|2
4V8D|1|AB|U|3
4V8D|1|AB|G|4
4V8D|1|AB|G|5
*
4V8D|1|AB|C|77
4V8D|1|AB|C|78
4V8D|1|AB|A|79
4V8D|1|AB|C|80

Current chains

Chain AB

TRNA-TYR

Nearby chains

Chain AC

Transfer RNA; tRNA

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BP

50S ribosomal protein L16