IL_4V8D_232

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUGC*GGCACUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_232 not in the Motif Atlas

Homologous match to IL_4LFB_048

Geometric discrepancy: 0.5024

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.1

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V8D|1|CA|G|1124
4V8D|1|CA|U|1125
4V8D|1|CA|U|1126
4V8D|1|CA|G|1127
4V8D|1|CA|C|1128
*
4V8D|1|CA|G|1143
4V8D|1|CA|G|1144
4V8D|1|CA|C|1145
4V8D|1|CA|A|1146
4V8D|1|CA|C|1147
4V8D|1|CA|U|1148
4V8D|1|CA|C|1149

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S9

Chain CM

30S RIBOSOMAL PROTEIN S10