IL_4V8D_236

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

4V8D|1|CA|U|1257, 4V8D|1|CA|A|1280, 4V8D|1|CA|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_236 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1665

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V8D|1|CA|G|1255
4V8D|1|CA|A|1256
4V8D|1|CA|U|1257
4V8D|1|CA|G|1258
*
4V8D|1|CA|C|1277
4V8D|1|CA|U|1278
4V8D|1|CA|A|1279
4V8D|1|CA|A|1280
4V8D|1|CA|U|1281
4V8D|1|CA|C|1282

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CF

30S RIBOSOMAL PROTEIN S3

Chain CM

30S RIBOSOMAL PROTEIN S10

Chain CQ

30S RIBOSOMAL PROTEIN S14