IL_4V8D_249

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUG,CAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_249 not in the Motif Atlas

Geometric match to IL_6IA2_003

Geometric discrepancy: 0.3166

The information below is about IL_6IA2_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

4V8D|1|CB|G|2
4V8D|1|CB|U|3
4V8D|1|CB|G|4
*
4V8D|1|CB|C|78
4V8D|1|CB|A|79
4V8D|1|CB|C|80

Current chains

Chain CB

TRNA-TYR

Nearby chains

Chain CC

Transfer RNA; tRNA

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DP

50S ribosomal protein L16