IL_4V8D_254

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGG,CCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_254 not in the Motif Atlas

Geometric match to IL_3LA5_001

Geometric discrepancy: 0.1882

The information below is about IL_3LA5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V8D|1|CD|G|5
4V8D|1|CD|G|6
4V8D|1|CD|G|7
*
4V8D|1|CD|C|75
4V8D|1|CD|C|76
4V8D|1|CD|C|77

Current chains

Chain CD

TRNA-TYR

Nearby chains

Chain D6

50S ribosomal protein L33

Chain DA

Large subunit ribosomal RNA; LSU rRNA