IL_4V8D_288

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGG*CUAC

Length

7 nucleotides

Bulged bases

4V8D|1|DA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_288 not in the Motif Atlas

Geometric match to IL_4WF9_071

Geometric discrepancy: 0.3993

The information below is about IL_4WF9_071

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_78536.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

4V8D|1|DA|G|880
4V8D|1|DA|G|881
4V8D|1|DA|G|882
*
4V8D|1|DA|C|894
4V8D|1|DA|U|895
4V8D|1|DA|A|896
4V8D|1|DA|C|897

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain CB

TRNA-TYR

Chain DP

50S ribosomal protein L16

Chain DV

50S ribosomal protein L25