3D structure

PDB id
4V8D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GGUAAAG*CGAAAAUGAUCGGGGC
Length
23 nucleotides
Bulged bases
4V8D|1|DA|U|1026, 4V8D|1|DA|A|1127, 4V8D|1|DA|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8D_295 not in the Motif Atlas
Geometric match to IL_7RQB_040
Geometric discrepancy: 0.0906
The information below is about IL_7RQB_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

4V8D|1|DA|G|1024
4V8D|1|DA|G|1025
4V8D|1|DA|U|1026
4V8D|1|DA|A|1027
4V8D|1|DA|A|1028
4V8D|1|DA|A|1029
4V8D|1|DA|G|1030
*
4V8D|1|DA|C|1124
4V8D|1|DA|G|1125
4V8D|1|DA|A|1126
4V8D|1|DA|A|1127
4V8D|1|DA|A|1128
4V8D|1|DA|A|1129
4V8D|1|DA|U|1130
4V8D|1|DA|G|1131
4V8D|1|DA|A|1132
4V8D|1|DA|U|1133
4V8D|1|DA|C|1135
4V8D|1|DA|G|1136
4V8D|1|DA|G|1137
4V8D|1|DA|G|1138
4V8D|1|DA|G|1139
4V8D|1|DA|C|1140

Current chains

Chain DA
RNA (2912-MER)

Nearby chains

Chain DB
5S ribosomal RNA; 5S rRNA
Chain DE
50S ribosomal protein L3
Chain DM
50S ribosomal protein L13
Chain DP
50S ribosomal protein L16

Coloring options:


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