IL_4V8D_299

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

4V8D|1|DA|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_299 not in the Motif Atlas

Geometric match to IL_1MMS_001

Geometric discrepancy: 0.2416

The information below is about IL_1MMS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

4V8D|1|DA|G|1059
4V8D|1|DA|U|1060
4V8D|1|DA|U|1061
4V8D|1|DA|G|1062
*
4V8D|1|DA|C|1076
4V8D|1|DA|A|1077
4V8D|1|DA|U|1078
4V8D|1|DA|C|1079

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DP

50S ribosomal protein L16