IL_4V8D_361

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4V8D|1|DA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_361 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1018

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V8D|1|DA|G|2737
4V8D|1|DA|A|2738
4V8D|1|DA|U|2739
4V8D|1|DA|A|2740
4V8D|1|DA|A|2741
4V8D|1|DA|C|2742
*
4V8D|1|DA|G|2762
4V8D|1|DA|G|2763
4V8D|1|DA|A|2764
4V8D|1|DA|A|2765
4V8D|1|DA|G|2766
4V8D|1|DA|C|2767

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DH

50S ribosomal protein L6

Chain DM

50S ribosomal protein L13