IL_4V8D_385
3D structure
- PDB id
- 4V8D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GCACUG*CAAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8D_385 not in the Motif Atlas
- Geometric match to IL_4V9F_035
- Geometric discrepancy: 0.2174
- The information below is about IL_4V9F_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38603.1
- Basepair signature
- cWW-cWS-L-R-L-R-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8D|1|DA|G|864
4V8D|1|DA|C|865
4V8D|1|DA|A|866
4V8D|1|DA|C|867
4V8D|1|DA|U|868
4V8D|1|DA|G|869
*
4V8D|1|DA|C|908
4V8D|1|DA|A|909
4V8D|1|DA|A|910
4V8D|1|DA|A|911
4V8D|1|DA|C|912
Current chains
- Chain DA
- RNA (2912-MER)
Nearby chains
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DP
- 50S ribosomal protein L16
- Chain DV
- 50S ribosomal protein L25
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