IL_4V8D_387
3D structure
- PDB id
- 4V8D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CCAG*CUG
- Length
- 7 nucleotides
- Bulged bases
- 4V8D|1|DA|C|995
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8D_387 not in the Motif Atlas
- Geometric match to IL_4P3U_012
- Geometric discrepancy: 0.2873
- The information below is about IL_4P3U_012
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 78
Unit IDs
4V8D|1|DA|C|994
4V8D|1|DA|C|995
4V8D|1|DA|A|996
4V8D|1|DA|G|997
*
4V8D|1|DA|C|1158
4V8D|1|DA|U|1159
4V8D|1|DA|G|1160
Current chains
- Chain DA
- RNA (2912-MER)
Nearby chains
- Chain D1
- 50S ribosomal protein L20
- Chain D2
- 50S ribosomal protein L21
- Chain DM
- 50S ribosomal protein L13
- Chain DX
- 50S ribosomal protein L30
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