IL_4V8D_390

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAA*UCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_390 not in the Motif Atlas

Homologous match to IL_9DFE_064

Geometric discrepancy: 0.0773

The information below is about IL_9DFE_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10432.1

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

10

Unit IDs

4V8D|1|DA|C|1663
4V8D|1|DA|A|1664
4V8D|1|DA|A|1665
*
4V8D|1|DA|U|1995
4V8D|1|DA|C|1996
4V8D|1|DA|G|1997

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DE

50S ribosomal protein L3

Chain DN

50S ribosomal protein L14

Chain DR

50S ribosomal protein L19