IL_4V8D_393

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

4V8D|1|DA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_393 not in the Motif Atlas

Homologous match to IL_9DFE_067

Geometric discrepancy: 0.0862

The information below is about IL_9DFE_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

4V8D|1|DA|A|1669
4V8D|1|DA|C|1670
4V8D|1|DA|U|1671
4V8D|1|DA|C|1672
4V8D|1|DA|U|1673
4V8D|1|DA|G|1674
*
4V8D|1|DA|C|1990
4V8D|1|DA|U|1991
4V8D|1|DA|G|1992
4V8D|1|DA|U|1993

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DE

50S ribosomal protein L3

Chain DN

50S ribosomal protein L14