IL_4V8D_401

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

4V8D|1|DA|A|2126, 4V8D|1|DA|U|2167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_401 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.594

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

4V8D|1|DA|G|2124
4V8D|1|DA|G|2125
4V8D|1|DA|A|2126
4V8D|1|DA|G|2127
*
4V8D|1|DA|C|2161
4V8D|1|DA|G|2162
4V8D|1|DA|C|2163
4V8D|1|DA|C|2164
4V8D|1|DA|G|2165
4V8D|1|DA|G|2166
4V8D|1|DA|U|2167
4V8D|1|DA|G|2168
4V8D|1|DA|A|2169
4V8D|1|DA|A|2170
4V8D|1|DA|A|2171
4V8D|1|DA|U|2172
4V8D|1|DA|A|2173
4V8D|1|DA|C|2174

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain CD

TRNA-TYR