IL_4V8E_031

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUA*UGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_031 not in the Motif Atlas

Homologous match to IL_7A0S_030

Geometric discrepancy: 0.2005

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

4V8E|1|AA|A|870
4V8E|1|AA|U|871
4V8E|1|AA|A|872
*
4V8E|1|AA|U|905
4V8E|1|AA|G|906
4V8E|1|AA|U|907

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AP

50S ribosomal protein L16

Chain AV

50S ribosomal protein L25