IL_4V8E_060

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_060 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.1475

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V8E|1|AA|A|1469
4V8E|1|AA|G|1470
4V8E|1|AA|A|1471
4V8E|1|AA|A|1472
4V8E|1|AA|G|1473
*
4V8E|1|AA|U|1520
4V8E|1|AA|G|1521
4V8E|1|AA|G|1522
4V8E|1|AA|U|1523

Current chains

Chain AA

RNA (2912-MER)

Nearby chains