IL_4V8E_077

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V8E|1|AA|A|1938, 4V8E|1|AA|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_077 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.1641

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

4V8E|1|AA|C|1934
4V8E|1|AA|G|1935
4V8E|1|AA|A|1936
4V8E|1|AA|A|1937
4V8E|1|AA|A|1938
4V8E|1|AA|U|1939
4V8E|1|AA|U|1940
4V8E|1|AA|C|1941
4V8E|1|AA|C|1942
4V8E|1|AA|U|1943
4V8E|1|AA|U|1944
4V8E|1|AA|G|1945
*
4V8E|1|AA|C|1961
4V8E|1|AA|C|1962
4V8E|1|AA|U|1963
4V8E|1|AA|G|1964

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BB

TRNA-TYR