IL_4V8E_087

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4V8E|1|AA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_087 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.4551

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V8E|1|AA|C|2129
4V8E|1|AA|U|2130
4V8E|1|AA|G|2131
4V8E|1|AA|U|2132
4V8E|1|AA|G|2133
4V8E|1|AA|A|2134
4V8E|1|AA|A|2135
4V8E|1|AA|C|2136
*
4V8E|1|AA|G|2155
4V8E|1|AA|G|2156
4V8E|1|AA|G|2157
4V8E|1|AA|A|2158
4V8E|1|AA|G|2159

Current chains

Chain AA

RNA (2912-MER)

Nearby chains