IL_4V8E_130

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCC,GGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_130 not in the Motif Atlas

Geometric match to IL_4P43_004

Geometric discrepancy: 0.1841

The information below is about IL_4P43_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V8E|1|BA|C|186|||D
4V8E|1|BA|C|186|||E
4V8E|1|BA|C|186|||F
*
4V8E|1|BA|G|191|||A
4V8E|1|BA|G|191|||B
4V8E|1|BA|G|191|||C

Current chains

Chain BA

16S ribosomal RNA

Nearby chains