IL_4V8E_188

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

4V8E|1|CA|G|99

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_188 not in the Motif Atlas

Homologous match to IL_7RQB_004

Geometric discrepancy: 0.1386

The information below is about IL_7RQB_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.2

Basepair signature

cWW-tSS-L-tSH-L-R-R-cWW-L

Number of instances in this motif group

18

Unit IDs

4V8E|1|CA|G|80
4V8E|1|CA|G|81
4V8E|1|CA|G|82
4V8E|1|CA|A|83
4V8E|1|CA|G|84
*
4V8E|1|CA|C|96
4V8E|1|CA|G|97
4V8E|1|CA|U|98
4V8E|1|CA|G|99
4V8E|1|CA|G|100
4V8E|1|CA|A|101
4V8E|1|CA|U|102
4V8E|1|CA|C|103

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CU

50S ribosomal protein L24

Chain CW

50S ribosomal protein L29