IL_4V8E_191

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_191 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0741

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V8E|1|CA|U|229
4V8E|1|CA|G|230
4V8E|1|CA|A|231
4V8E|1|CA|G|232
4V8E|1|CA|U|233
4V8E|1|CA|A|234
4V8E|1|CA|G|235
*
4V8E|1|CA|C|243
4V8E|1|CA|G|244
4V8E|1|CA|A|245
4V8E|1|CA|A|246
4V8E|1|CA|A|247
4V8E|1|CA|G|248

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C8

50S ribosomal protein L35

Chain CO

50S ribosomal protein L15