IL_4V8E_204

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V8E|1|CA|G|849, 4V8E|1|CA|G|853

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_204 not in the Motif Atlas

Homologous match to IL_4WF9_021

Geometric discrepancy: 0.0868

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

4V8E|1|CA|G|722
4V8E|1|CA|A|723
4V8E|1|CA|A|724
4V8E|1|CA|A|725
4V8E|1|CA|C|726
*
4V8E|1|CA|G|847
4V8E|1|CA|A|848
4V8E|1|CA|G|849
4V8E|1|CA|A|850
4V8E|1|CA|U|851
4V8E|1|CA|A|852
4V8E|1|CA|G|853
4V8E|1|CA|C|854

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CF

50S ribosomal protein L4

Chain CO

50S ribosomal protein L15