IL_4V8E_209
3D structure
- PDB id
- 4V8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGA*UAACC
- Length
- 8 nucleotides
- Bulged bases
- 4V8E|1|CA|G|824, 4V8E|1|CA|A|836, 4V8E|1|CA|A|837, 4V8E|1|CA|C|838
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8E_209 not in the Motif Atlas
- Geometric match to IL_7RQB_023
- Geometric discrepancy: 0.0929
- The information below is about IL_7RQB_023
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.6
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8E|1|CA|G|823
4V8E|1|CA|G|824
4V8E|1|CA|A|825
*
4V8E|1|CA|U|835
4V8E|1|CA|A|836
4V8E|1|CA|A|837
4V8E|1|CA|C|838
4V8E|1|CA|C|839
Current chains
- Chain CA
- RNA (2912-MER)
Nearby chains
- Chain C7
- 50S ribosomal protein L34
- Chain CD
- 50S ribosomal protein L2
- Chain CF
- 50S ribosomal protein L4
- Chain CS
- 50S ribosomal protein L22
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