IL_4V8E_212

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGAC*GGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_212 not in the Motif Atlas

Geometric match to IL_7RQB_026

Geometric discrepancy: 0.2098

The information below is about IL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94165.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V8E|1|CA|C|894
4V8E|1|CA|U|895
4V8E|1|CA|G|896
4V8E|1|CA|A|897
4V8E|1|CA|C|898
*
4V8E|1|CA|G|974
4V8E|1|CA|G|975
4V8E|1|CA|U|976
4V8E|1|CA|G|977

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CX

50S ribosomal protein L30