IL_4V8E_216

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_216 not in the Motif Atlas

Homologous match to IL_7RQB_029

Geometric discrepancy: 0.1203

The information below is about IL_7RQB_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_02509.1

Basepair signature

cWW-tSW-cWS-cSH-tWH-R-R-cWW

Number of instances in this motif group

5

Unit IDs

4V8E|1|CA|G|912
4V8E|1|CA|C|913
4V8E|1|CA|A|914
4V8E|1|CA|C|915
4V8E|1|CA|U|916
*
4V8E|1|CA|A|956
4V8E|1|CA|A|957
4V8E|1|CA|A|958
4V8E|1|CA|C|959

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CP

50S ribosomal protein L16

Chain CV

50S ribosomal protein L25