IL_4V8E_217

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUAG*CAAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_217 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.3943

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V8E|1|CA|G|923
4V8E|1|CA|C|924
4V8E|1|CA|U|925
4V8E|1|CA|A|926
4V8E|1|CA|G|927
*
4V8E|1|CA|C|945
4V8E|1|CA|A|946
4V8E|1|CA|A|947
4V8E|1|CA|A|948
4V8E|1|CA|C|949

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CP

50S ribosomal protein L16

Chain CV

50S ribosomal protein L25

Chain DB

Transfer RNA; tRNA