IL_4V8E_222

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_222 not in the Motif Atlas

Geometric match to IL_8VTW_036

Geometric discrepancy: 0.1437

The information below is about IL_8VTW_036

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

4V8E|1|CA|C|1051
4V8E|1|CA|C|1052
4V8E|1|CA|C|1053
4V8E|1|CA|C|1054
4V8E|1|CA|C|1055
4V8E|1|CA|A|1056
4V8E|1|CA|A|1057
4V8E|1|CA|G|1058
*
4V8E|1|CA|C|1197
4V8E|1|CA|G|1198

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C1

50S ribosomal protein L20

Chain CM

50S ribosomal protein L13