IL_4V8E_223

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

4V8E|1|CA|U|1059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_223 not in the Motif Atlas

Geometric match to IL_5TBW_050

Geometric discrepancy: 0.221

The information below is about IL_5TBW_050

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V8E|1|CA|G|1058
4V8E|1|CA|U|1059
4V8E|1|CA|C|1060
*
4V8E|1|CA|G|1196
4V8E|1|CA|C|1197

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C1

50S ribosomal protein L20

Chain CM

50S ribosomal protein L13