IL_4V8E_224

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

4V8E|1|CA|U|1188, 4V8E|1|CA|A|1190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_224 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.155

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4V8E|1|CA|C|1065
4V8E|1|CA|U|1066
4V8E|1|CA|A|1067
4V8E|1|CA|A|1068
4V8E|1|CA|G|1069
4V8E|1|CA|U|1070
4V8E|1|CA|G|1071
*
4V8E|1|CA|C|1186
4V8E|1|CA|U|1187
4V8E|1|CA|U|1188
4V8E|1|CA|A|1189
4V8E|1|CA|A|1190
4V8E|1|CA|G|1191

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CH

50S ribosomal protein L6

Chain CM

50S ribosomal protein L13