IL_4V8E_231

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

4V8E|1|CA|G|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_231 not in the Motif Atlas

Homologous match to IL_7RQB_045

Geometric discrepancy: 0.0968

The information below is about IL_7RQB_045

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V8E|1|CA|C|1242
4V8E|1|CA|G|1243
4V8E|1|CA|U|1244
*
4V8E|1|CA|A|1294
4V8E|1|CA|G|1295
4V8E|1|CA|U|1296
4V8E|1|CA|G|1297

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C1

50S ribosomal protein L20

Chain CF

50S ribosomal protein L4

Chain CO

50S ribosomal protein L15