IL_4V8E_235

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_235 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.0516

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V8E|1|CA|A|1309
4V8E|1|CA|U|1310
4V8E|1|CA|G|1311
4V8E|1|CA|A|1312
4V8E|1|CA|G|1313
4V8E|1|CA|U|1314
4V8E|1|CA|A|1315
4V8E|1|CA|A|1316
*
4V8E|1|CA|U|2034
4V8E|1|CA|G|2035
4V8E|1|CA|A|2036
4V8E|1|CA|A|2037
4V8E|1|CA|A|2038
4V8E|1|CA|U|2039
4V8E|1|CA|U|2040

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C5

50S ribosomal protein L32

Chain CF

50S ribosomal protein L4

Chain CS

50S ribosomal protein L22