IL_4V8E_241

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

4V8E|1|CA|U|1467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_241 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.0973

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4V8E|1|CA|C|1464
4V8E|1|CA|G|1465
4V8E|1|CA|A|1466
4V8E|1|CA|U|1467
4V8E|1|CA|G|1468
*
4V8E|1|CA|C|1625
4V8E|1|CA|U|1626
4V8E|1|CA|A|1627
4V8E|1|CA|A|1628
4V8E|1|CA|G|1629

Current chains

Chain CA

RNA (2912-MER)

Nearby chains